Variant report

Variant	rs1958028
Chromosome Location	chr14:31921766-31921767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31918485..31921453-chr14:31921609..31924237,3	MCF-7	breast:
2	chr14:31917093..31923585-chr14:31924368..31929094,11	MCF-7	breast:
3	chr14:31888318..31891005-chr14:31919529..31921805,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUBPL-1	chr14:31921313-31922089	ENSG00000250365

Variant related genes	Relation type
ENSG00000250365	Chromatin interaction
ENSG00000129480	Chromatin interaction
ENSG00000129493	Chromatin interaction
ENSG00000203546	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8010198	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv456198	chr14:31919728-31972289	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv564179	chr14:31919728-31972289	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31890400-31925800	Weak transcription	Right Ventricle	heart
2	chr14:31890600-31922400	Weak transcription	Brain Angular Gyrus	brain
3	chr14:31890800-31925200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:31901200-31922400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:31904600-31925200	Weak transcription	Fetal Brain Male	brain
6	chr14:31905200-31925800	Weak transcription	NHDF-Ad	bronchial
7	chr14:31907000-31925200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:31910600-31924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:31911000-31925200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:31911000-31925200	Weak transcription	K562	blood
11	chr14:31911200-31925800	Weak transcription	Fetal Intestine Small	intestine
12	chr14:31911600-31925200	Weak transcription	Placenta	Placenta
13	chr14:31911600-31926000	Weak transcription	Lung	lung
14	chr14:31912000-31925800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:31912200-31925200	Weak transcription	HSMMtube	muscle
16	chr14:31912200-31925200	Weak transcription	NHLF	lung
17	chr14:31913600-31925200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:31913800-31923600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:31914000-31926000	Weak transcription	Small Intestine	intestine
20	chr14:31914800-31922600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:31914800-31922600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:31914800-31925200	Weak transcription	Fetal Stomach	stomach
23	chr14:31915200-31925200	Weak transcription	Primary T cells from cord blood	blood
24	chr14:31915400-31922600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:31915400-31922600	Strong transcription	HepG2	liver
26	chr14:31915600-31922000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:31915800-31924000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:31915800-31925200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr14:31916000-31925200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:31916000-31925800	Weak transcription	Thymus	Thymus
31	chr14:31916000-31926000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:31916200-31922600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:31916400-31922400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:31917000-31922000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:31917000-31922200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:31917000-31922600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr14:31917000-31923000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:31917200-31921800	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr14:31917600-31922200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:31917800-31921800	Strong transcription	Fetal Thymus	thymus
41	chr14:31917800-31923400	Weak transcription	GM12878-XiMat	blood
42	chr14:31918600-31926000	Weak transcription	Gastric	stomach
43	chr14:31918800-31922000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:31918800-31923200	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:31919400-31922400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:31919400-31922600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:31919400-31923600	Weak transcription	Hela-S3	cervix
48	chr14:31919400-31925200	Weak transcription	HUVEC	blood vessel
49	chr14:31919600-31921800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:31919600-31921800	Strong transcription	Primary T helper cells fromperipheralblood	blood

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