Variant report

Variant	rs1958431
Chromosome Location	chr14:84176134-84176135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10131005	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11845067	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11850737	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12435458	0.81[ASN][1000 genomes]
rs1887945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1952539	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1952543	0.89[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs1958445	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1958446	0.82[AMR][1000 genomes]
rs1958447	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2149682	0.87[ASN][1000 genomes]
rs2372525	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372526	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4904136	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574754	0.81[AFR][1000 genomes]
rs8012887	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046869	chr14:83749048-84284813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv542152	chr14:83749048-84284813	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1039276	chr14:83814378-84232588	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758365	chr14:84136458-84293840	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2760003	chr14:84136458-84293840	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv832844	chr14:84136460-84293827	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84173400-84176400	Weak transcription	Fetal Brain Male	brain
2	chr14:84173400-84177800	Weak transcription	Fetal Brain Female	brain
3	chr14:84173400-84178800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:84173400-84180000	Weak transcription	Ovary	ovary
5	chr14:84175200-84176200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:84175800-84176400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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