Variant report

Variant	rs1958826
Chromosome Location	chr14:31974209-31974210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17097972	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097994	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097996	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1958830	1.00[EUR][1000 genomes]
rs55795864	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55974230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56055314	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56942643	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57066011	1.00[EUR][1000 genomes]
rs58963071	1.00[EUR][1000 genomes]
rs59945954	1.00[EUR][1000 genomes]
rs61142889	1.00[EUR][1000 genomes]
rs61258127	1.00[EUR][1000 genomes]
rs74040856	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74040859	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74040860	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv518956	chr14:31958761-31983371	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv901590	chr14:31958761-32012593	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31973000-31974400	Enhancers	Fetal Brain Male	brain
2	chr14:31973400-31976200	Enhancers	Ovary	ovary
3	chr14:31973600-31974400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:31973600-31974800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr14:31973800-31974400	Enhancers	Left Ventricle	heart
6	chr14:31973800-31974400	Enhancers	Lung	lung
7	chr14:31974000-31974800	Enhancers	HSMMtube	muscle
8	chr14:31974000-31975200	Enhancers	Aorta	Aorta
9	chr14:31974200-31974400	Flanking Active TSS	Fetal Heart	heart
10	chr14:31974200-31974600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:31974200-31974800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:31974200-31974800	Enhancers	Stomach Smooth Muscle	stomach
13	chr14:31974200-31975000	Enhancers	Right Atrium	heart
14	chr14:31974200-31975200	Enhancers	Placenta	Placenta
15	chr14:31974200-31975200	Enhancers	Fetal Stomach	stomach
16	chr14:31974200-31975200	Enhancers	NHDF-Ad	bronchial
17	chr14:31974200-31975200	Enhancers	NHLF	lung
18	chr14:31974200-31975400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr14:31974200-31975400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr14:31974200-31975400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr14:31974200-31975600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:31974200-31975600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:31974200-31975600	Enhancers	Adipose Nuclei	Adipose
24	chr14:31974200-31975600	Enhancers	Fetal Lung	lung
25	chr14:31974200-31975600	Enhancers	Fetal Muscle Leg	muscle
26	chr14:31974200-31975600	Enhancers	Placenta Amnion	Placenta Amnion
27	chr14:31974200-31975600	Enhancers	Right Ventricle	heart
28	chr14:31974200-31975600	Enhancers	HSMM	muscle
29	chr14:31974200-31975600	Enhancers	Osteobl	bone

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