Variant report
Variant | rs1959379 |
---|---|
Chromosome Location | chr14:44974966-44974967 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:41)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:41 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr14:44974960-44975110 | HepG2 | liver: | n/a | n/a |
2 | CTCF | chr14:44974940-44975090 | GM12870 | blood: | n/a | n/a |
3 | RAD21 | chr14:44974815-44975182 | H1-hESC | embryonic stem cell: | n/a | n/a |
4 | CTCF | chr14:44974915-44975059 | LNCaP | prostate: | n/a | n/a |
5 | CTCF | chr14:44974860-44975010 | GM12873 | blood: | n/a | n/a |
6 | CTCF | chr14:44974776-44975167 | MCF-7 | breast: | n/a | n/a |
7 | CTCF | chr14:44974960-44975110 | HEK293 | kidney: | n/a | n/a |
8 | CTCF | chr14:44974916-44975071 | MCF-7 | breast: | n/a | n/a |
9 | CTCF | chr14:44974963-44975049 | K562 | blood: | n/a | n/a |
10 | CTCF | chr14:44974940-44975049 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | RAD21 | chr14:44974790-44975136 | HCT-116 | colon: | n/a | n/a |
12 | CTCF | chr14:44974798-44975064 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | SMC3 | chr14:44974806-44975157 | HepG2 | liver: | n/a | n/a |
14 | CTCF | chr14:44974874-44975172 | MCF-7 | breast: | n/a | n/a |
15 | CTCF | chr14:44974919-44975036 | Pancreas_OC | pancreas: | n/a | n/a |
16 | CTCF | chr14:44974915-44975096 | HepG2 | liver: | n/a | n/a |
17 | RAD21 | chr14:44974715-44975167 | H1-hESC | embryonic stem cell: | n/a | n/a |
18 | RAD21 | chr14:44974849-44975102 | ECC-1 | luminal epithelium: | n/a | n/a |
19 | RAD21 | chr14:44974807-44975160 | H1-hESC | embryonic stem cell: | n/a | n/a |
20 | CTCF | chr14:44974908-44975076 | MCF-7 | breast: | n/a | n/a |
21 | CTCF | chr14:44974920-44975070 | MCF-7 | breast: | n/a | n/a |
22 | RAD21 | chr14:44974736-44975172 | ECC-1 | luminal epithelium: | n/a | n/a |
23 | CTCF | chr14:44974920-44975070 | HepG2 | liver: | n/a | n/a |
24 | CTCF | chr14:44974860-44975010 | NB4 | blood: | n/a | n/a |
25 | RAD21 | chr14:44974818-44975118 | HepG2 | liver: | n/a | n/a |
26 | CTCF | chr14:44974859-44975084 | HepG2 | liver: | n/a | n/a |
27 | RAD21 | chr14:44974825-44975107 | HepG2 | liver: | n/a | n/a |
28 | CTCF | chr14:44974840-44974990 | HL-60 | blood: | n/a | n/a |
29 | RAD21 | chr14:44974768-44975198 | MCF-7 | breast: | n/a | n/a |
30 | CTCF | chr14:44974860-44975010 | Hela-S3 | cervix: | n/a | n/a |
31 | CTCF | chr14:44974878-44975104 | MCF-7 | breast: | n/a | n/a |
32 | CTCF | chr14:44974900-44975050 | MCF-7 | breast: | n/a | n/a |
33 | RAD21 | chr14:44974814-44975163 | HepG2 | liver: | n/a | n/a |
34 | CTCF | chr14:44974958-44975042 | MCF-7 | breast: | n/a | n/a |
35 | CTCF | chr14:44974872-44975075 | K562 | blood: | n/a | n/a |
36 | RAD21 | chr14:44974778-44975278 | MCF-7 | breast: | n/a | n/a |
37 | CTCF | chr14:44974940-44975090 | HCT-116 | colon: | n/a | n/a |
38 | CTCF | chr14:44974912-44975070 | MCF-7 | breast: | n/a | n/a |
39 | CTCF | chr14:44974780-44975076 | HepG2 | liver: | n/a | n/a |
40 | CTCF | chr14:44974880-44975030 | K562 | blood: | n/a | n/a |
41 | MAFK | chr14:44974926-44975138 | HepG2 | liver: | n/a | chr14:44975019-44975034 |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000258747 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11157401 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12893426 | 0.82[ASN][1000 genomes] |
rs17115161 | 0.82[AMR][1000 genomes] |
rs17115167 | 0.82[AMR][1000 genomes] |
rs1959375 | 0.80[CEU][hapmap] |
rs1959380 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs36061904 | 0.82[ASN][1000 genomes] |
rs3825630 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4497578 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7142451 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs928700 | 0.81[AMR][1000 genomes] |
rs982801 | 0.81[AMR][1000 genomes] |
rs991171 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv456254 | chr14:44204571-44992259 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
2 | nsv564651 | chr14:44204571-44992259 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
3 | nsv1054134 | chr14:44501865-45271806 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
4 | nsv542074 | chr14:44501865-45271806 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
5 | nsv456262 | chr14:44733804-45149546 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
6 | nsv564681 | chr14:44733804-45149546 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
7 | nsv1046622 | chr14:44752381-45154325 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
8 | nsv542076 | chr14:44752381-45154325 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
9 | nsv869289 | chr14:44752382-45447415 | Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
10 | nsv1042407 | chr14:44759135-45157448 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
11 | nsv542077 | chr14:44759135-45157448 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
12 | esv2753398 | chr14:44795350-45207550 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
13 | nsv901831 | chr14:44822128-44992259 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
14 | nsv901832 | chr14:44847444-45415597 | Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
15 | nsv901833 | chr14:44931593-45028731 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
16 | nsv869391 | chr14:44948825-45241392 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
17 | nsv456273 | chr14:44950886-45006478 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
18 | nsv564694 | chr14:44950886-45006478 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
19 | nsv977600 | chr14:44958848-44992140 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
20 | nsv995092 | chr14:44973489-45393462 | Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
No data |