Variant report

Variant	rs1960357
Chromosome Location	chr8:9794574-9794575
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10094779	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10095135	0.84[EUR][1000 genomes]
rs10481450	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28645519	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs497417	0.80[CHB][hapmap]
rs499005	0.84[ASN][1000 genomes]
rs509820	0.95[CHB][hapmap]
rs544515	0.84[ASN][1000 genomes]
rs582027	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs582491	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs583484	0.89[ASN][1000 genomes]
rs588760	0.89[ASN][1000 genomes]
rs615171	0.84[ASN][1000 genomes]
rs616021	0.86[ASN][1000 genomes]
rs688245	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs694553	0.90[CHB][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1960357	C8orf5	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9791800-9801800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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