Variant report

Variant	rs1961398
Chromosome Location	chr5:148145872-148145873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1368278	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2400644	0.91[AFR][1000 genomes]
rs30310	0.89[AFR][1000 genomes]
rs30324	0.86[AFR][1000 genomes]
rs4513680	1.00[AFR][1000 genomes]
rs6580580	0.82[AFR][1000 genomes]
rs6879964	0.89[AFR][1000 genomes]
rs6882476	0.86[AFR][1000 genomes]
rs6885216	0.91[AFR][1000 genomes]
rs6892967	0.91[AFR][1000 genomes]
rs919724	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148139000-148149200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:148145000-148149400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:148145400-148146600	Enhancers	Primary B cells from cord blood	blood
4	chr5:148145600-148146400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:148145600-148146800	Enhancers	GM12878-XiMat	blood
6	chr5:148145600-148147400	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:148145800-148146600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:148145800-148146600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:148145800-148146600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:148145800-148146600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:148145800-148146600	Enhancers	HMEC	breast
12	chr5:148145800-148146600	Enhancers	NHEK	skin
13	chr5:148145800-148146800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr5:148145800-148149800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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