Variant report

Variant	rs1962330
Chromosome Location	chr10:50464165-50464166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50461288..50465074-chr10:50465528..50469172,3	K562	blood:
2	chr10:50462897..50464824-chr10:50509332..50512254,2	K562	blood:
3	chr10:50448759..50451494-chr10:50463430..50466103,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10745254	0.92[AFR][1000 genomes]
rs10745255	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10745256	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10776548	0.92[AFR][1000 genomes]
rs10776554	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10776557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10857453	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11101071	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1122558	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987086	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377946	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2889797	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3954175	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4838378	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4838475	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838476	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838489	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4838492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs5027774	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098639	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7098667	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7893248	0.81[ASN][1000 genomes]
rs7909185	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7913739	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3398622	chr10:50460546-50464244	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50460800-50467000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50461400-50464200	Enhancers	Fetal Thymus	thymus
3	chr10:50461400-50466000	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:50462200-50464800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr10:50462600-50464200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:50463000-50464200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
8	chr10:50463200-50465200	Enhancers	Primary B cells from cord blood	blood
9	chr10:50463200-50466000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:50463200-50466200	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:50463200-50466400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50463200-50470400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:50463400-50465200	Weak transcription	Spleen	Spleen
14	chr10:50463400-50466000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:50463600-50464200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:50463600-50466400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:50463800-50464200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:50464000-50464400	Enhancers	Psoas Muscle	Psoas
19	chr10:50464000-50468000	Weak transcription	K562	blood

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