Variant report
| Variant | rs1964604 |
|---|---|
| Chromosome Location | chr4:172544350-172544351 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10027081 | 0.93[ASN][1000 genomes] |
| rs10029093 | 0.90[ASN][1000 genomes] |
| rs1027205 | 0.93[ASN][1000 genomes] |
| rs1027206 | 0.93[ASN][1000 genomes] |
| rs1406510 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1406511 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1406512 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1490492 | 0.88[ASN][1000 genomes] |
| rs1528938 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1565469 | 0.87[ASN][1000 genomes] |
| rs1565470 | 0.93[ASN][1000 genomes] |
| rs1919495 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1963031 | 0.89[ASN][1000 genomes] |
| rs2029501 | 0.93[ASN][1000 genomes] |
| rs2029502 | 0.93[ASN][1000 genomes] |
| rs2200989 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2222788 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2332359 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3902945 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4692897 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4692898 | 0.87[ASN][1000 genomes] |
| rs6830858 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6848298 | 0.87[ASN][1000 genomes] |
| rs6848414 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7661649 | 0.84[ASN][1000 genomes] |
| rs7667025 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7674432 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7676438 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7676453 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7689150 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9312509 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022077 | chr4:172460997-172609297 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv537356 | chr4:172460997-172609297 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:172543800-172544400 | Enhancers | Primary B cells from peripheral blood | blood |
| 2 | chr4:172544000-172550200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
