Variant report

Variant	rs1965354
Chromosome Location	chr12:30647461-30647462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1018172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11835490	0.91[EUR][1000 genomes]
rs11835968	0.92[EUR][1000 genomes]
rs2220170	0.91[EUR][1000 genomes]
rs58828426	0.92[EUR][1000 genomes]
rs59222301	0.98[EUR][1000 genomes]
rs60324840	0.98[EUR][1000 genomes]
rs7295452	0.98[EUR][1000 genomes]
rs7309540	0.98[EUR][1000 genomes]
rs73279227	0.93[EUR][1000 genomes]
rs73279250	0.98[EUR][1000 genomes]
rs74085562	0.91[EUR][1000 genomes]
rs7973001	0.98[EUR][1000 genomes]
rs7979005	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1050233	chr12:30590071-30670919	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30640600-30648800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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