Variant report

Variant	rs1966906
Chromosome Location	chr2:110694378-110694379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:110694099-110694582	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000186148	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:47 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011456	chr2:110290958-110980402	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535861	chr2:110290958-110980402	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1009367	chr2:110349178-110863354	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv491837	chr2:110381297-110964737	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv999552	chr2:110396395-110978224	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv428061	chr2:110423940-110714002	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv2751812	chr2:110457214-110980346	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	nsv1011653	chr2:110461521-110978224	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv874781	chr2:110463288-110804164	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv874782	chr2:110463288-111334482	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
11	nsv874783	chr2:110498943-110886142	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv1013901	chr2:110501500-110983669	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv1003103	chr2:110504334-111084885	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
14	nsv874784	chr2:110524250-110829655	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv874785	chr2:110524250-110843108	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
16	nsv874786	chr2:110524250-110857243	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
17	nsv874787	chr2:110524250-111334482	Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
18	esv1802487	chr2:110617560-110733551	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
19	esv1814360	chr2:110617560-110736920	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
20	nsv469649	chr2:110663085-110840236	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
21	nsv482634	chr2:110663085-110840236	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
22	nsv508157	chr2:110676276-110741221	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
23	esv1802036	chr2:110678349-110732671	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
24	esv16107	chr2:110683130-110733434	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
25	esv1810054	chr2:110684637-110744543	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
26	esv1791783	chr2:110686262-110732567	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
27	nsv10114	chr2:110686620-110733249	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
28	esv3349070	chr2:110686713-110694411	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
29	esv3521153	chr2:110686713-110713311	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
30	esv3521154	chr2:110687113-110713211	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
31	esv3521155	chr2:110687113-110713211	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
32	esv3513822	chr2:110687113-110734211	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
33	esv3513823	chr2:110687113-110734211	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
34	esv1792408	chr2:110687496-110732567	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
35	esv1811619	chr2:110687496-110732567	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
36	esv1810014	chr2:110690013-110732567	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
37	esv1804315	chr2:110690252-110732502	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
38	esv1794266	chr2:110690252-110732632	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
39	esv1810269	chr2:110690467-110731604	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
40	nsv963691	chr2:110690745-110695017	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
41	nsv979090	chr2:110690745-110706972	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
42	esv3451033	chr2:110692163-110704861	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
43	esv3460307	chr2:110692463-110697261	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
44	esv3460309	chr2:110692463-110697261	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
45	esv2757824	chr2:110693356-111123649	Strong transcription Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
46	esv2759082	chr2:110693356-111123649	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	nsv532271	chr2:110694195-111209736	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links