Variant report

Variant	rs1967063
Chromosome Location	chr15:59475270-59475271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59468439..59470202-chr15:59473986..59476480,2	K562	blood:
2	chr15:59474900..59477474-chr15:59486434..59489003,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11632378	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11637519	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12591296	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12916831	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1872742	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1979552	0.81[AFR][1000 genomes]
rs2306786	1.00[ASN][1000 genomes]
rs8036783	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs923242	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs931346	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59437800-59484400	Weak transcription	Fetal Brain Male	brain
2	chr15:59445600-59479600	Weak transcription	Fetal Kidney	kidney
3	chr15:59454000-59482000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:59464400-59496800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:59467800-59479600	Weak transcription	Brain Angular Gyrus	brain
6	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
7	chr15:59468000-59479800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:59468000-59480000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
10	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr15:59468800-59490800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr15:59468800-59492600	Strong transcription	Fetal Intestine Large	intestine
13	chr15:59469000-59482800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:59470000-59475800	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:59470000-59482200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:59470800-59485200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:59471000-59480400	Weak transcription	Colonic Mucosa	Colon
18	chr15:59471000-59484000	Weak transcription	Esophagus	oesophagus
19	chr15:59471400-59480000	Weak transcription	Left Ventricle	heart
20	chr15:59471400-59482200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:59471600-59476600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:59471800-59475800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:59471800-59479400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:59471800-59479600	Weak transcription	Gastric	stomach
25	chr15:59472600-59480600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:59473000-59476200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:59473200-59475400	Strong transcription	Primary B cells from cord blood	blood
28	chr15:59473200-59477600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:59473400-59475400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:59473400-59475400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
31	chr15:59473400-59482200	Weak transcription	Spleen	Spleen
32	chr15:59473600-59475400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:59473600-59475400	Strong transcription	HSMMtube	muscle
34	chr15:59473600-59475600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr15:59473600-59475600	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr15:59473600-59479600	Weak transcription	Fetal Heart	heart
37	chr15:59473800-59475400	ZNF genes & repeats	Placenta	Placenta
38	chr15:59473800-59475400	ZNF genes & repeats	NH-A	brain
39	chr15:59473800-59475400	ZNF genes & repeats	NHLF	lung
40	chr15:59473800-59475800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:59473800-59476000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr15:59473800-59477000	ZNF genes & repeats	GM12878-XiMat	blood
43	chr15:59473800-59477400	ZNF genes & repeats	A549	lung
44	chr15:59473800-59478800	Strong transcription	Osteobl	bone
45	chr15:59474000-59475400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:59474000-59475400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:59474000-59475400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr15:59474000-59476800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:59474000-59476800	ZNF genes & repeats	Fetal Intestine Small	intestine
50	chr15:59474000-59477200	Weak transcription	Monocytes-CD14+_RO01746	blood

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