Variant report

Variant	rs1968614
Chromosome Location	chr2:114137621-114137622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10196370	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13395590	0.90[EUR][1000 genomes]
rs13411628	0.89[EUR][1000 genomes]
rs1968612	0.93[EUR][1000 genomes]
rs2034278	0.87[EUR][1000 genomes]
rs2863961	0.94[EUR][1000 genomes]
rs6542129	0.94[EUR][1000 genomes]
rs6542130	0.93[EUR][1000 genomes]
rs6711441	0.94[EUR][1000 genomes]
rs6733253	0.82[ASN][1000 genomes]
rs6745928	0.88[EUR][1000 genomes]
rs6748429	0.94[EUR][1000 genomes]
rs6755915	0.92[EUR][1000 genomes]
rs6758869	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757826	chr2:114074949-114253780	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759085	chr2:114074949-114428678	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1002255	chr2:114120037-114236620	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1968614	CBWD1///CBWD2///CBWD3///CBWD5///CBWD6///	N/A	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114128800-114147400	Weak transcription	A549	lung
2	chr2:114135000-114138600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:114135600-114138600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:114137400-114137800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:114137600-114144200	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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