Variant report

Variant	rs1970876
Chromosome Location	chr12:119030221-119030222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10850999	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11069009	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11608626	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11609167	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1476330	0.86[AMR][1000 genomes]
rs1589361	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1915349	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2009595	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2049128	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2090775	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2139728	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35110447	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766906	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4767696	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73411669	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1043906	chr12:118991884-119087146	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119028400-119038800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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