Variant report

Variant	rs1972289
Chromosome Location	chr14:84428829-84428830
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12885696	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56049832	0.89[ASN][1000 genomes]
rs61985920	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7153883	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs74071128	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84419000-84436000	Weak transcription	Pancreas	Pancrea
2	chr14:84426400-84429200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:84427200-84429400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr14:84427800-84436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:84428000-84429800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr14:84428400-84429400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr14:84428600-84429200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:84428800-84429000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:84428800-84429000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr14:84428800-84429000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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