Variant report

Variant	rs1973733
Chromosome Location	chr15:78610259-78610260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78608718..78610938-chr15:78740404..78742745,2	K562	blood:
2	chr15:78600701..78601454-chr15:78609714..78610487,3	MCF-7	breast:
3	chr15:78607811..78611312-chr15:78615142..78617674,3	K562	blood:
4	chr15:78610016..78612346-chr15:78729439..78731973,2	MCF-7	breast:
5	chr15:78590360..78592369-chr15:78608915..78610812,2	K562	blood:
6	chr15:78608100..78610660-chr15:78729314..78732493,3	K562	blood:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction
ENSG00000140395	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28547162	1.00[MEX][hapmap]
rs8040826	1.00[MEX][hapmap]
rs8041135	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78601400-78616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:78608800-78613400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:78609400-78611400	Weak transcription	GM12878-XiMat	blood
4	chr15:78609400-78614200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:78609600-78610600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:78609600-78610800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:78609600-78613600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:78609600-78613800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:78609600-78614000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:78609600-78614200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:78609600-78614400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:78609800-78610400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr15:78609800-78611000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:78609800-78611600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:78609800-78612000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:78609800-78612800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:78609800-78613400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:78609800-78613400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:78609800-78613400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:78609800-78613600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:78609800-78613800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:78609800-78614400	Weak transcription	Left Ventricle	heart
23	chr15:78610000-78611000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:78610000-78613400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr15:78610000-78613600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:78610000-78617600	Weak transcription	Fetal Intestine Large	intestine

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