Variant report

Variant	rs1973797
Chromosome Location	chr3:179601521-179601522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1567622	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1567624	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1609981	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1819122	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1985273	0.86[AMR][1000 genomes]
rs2037633	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2177591	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2879636	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3774253	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3821798	0.82[ASN][1000 genomes]
rs4146790	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4854954	0.81[AMR][1000 genomes]
rs6443675	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6784136	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7616210	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7634271	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7650575	0.82[ASN][1000 genomes]
rs9836550	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9862706	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179564200-179606000	Strong transcription	Dnd41	blood
3	chr3:179595800-179605800	Weak transcription	Pancreas	Pancrea
4	chr3:179598800-179603600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:179600400-179603400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:179600400-179610600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:179600600-179602400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:179600600-179603400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:179601000-179602200	Enhancers	GM12878-XiMat	blood
10	chr3:179601000-179603400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:179601000-179604400	Weak transcription	Brain Substantia Nigra	brain
12	chr3:179601000-179605800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:179601000-179609000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:179601200-179603400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:179601200-179603600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:179601200-179603600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:179601200-179603600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:179601200-179603600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:179601200-179603600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:179601200-179604800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:179601200-179605400	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:179601200-179624200	Weak transcription	Brain Inferior Temporal Lobe	brain

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