Variant report

Variant	rs1975177
Chromosome Location	chr19:42835692-42835693
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42747876..42750484-chr19:42833643..42836165,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
6	nsv911785	chr19:42741124-42917545	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42830600-42840200	Weak transcription	Aorta	Aorta
2	chr19:42830800-42840000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:42830800-42840200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr19:42830800-42840400	Weak transcription	Colonic Mucosa	Colon
5	chr19:42830800-42840400	Weak transcription	A549	lung
6	chr19:42830800-42840600	Weak transcription	Primary B cells from cord blood	blood
7	chr19:42830800-42841000	Weak transcription	HSMMtube	muscle
8	chr19:42830800-42851200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr19:42830800-42856400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:42830800-42867200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr19:42830800-42867600	Weak transcription	Fetal Kidney	kidney
12	chr19:42830800-42879200	Weak transcription	Small Intestine	intestine
13	chr19:42830800-42884200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr19:42831000-42839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:42831000-42840000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr19:42831000-42840400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr19:42831000-42840400	Weak transcription	Osteobl	bone
18	chr19:42831000-42843600	Weak transcription	Right Atrium	heart
19	chr19:42831000-42856200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr19:42831000-42860600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr19:42831000-42874400	Weak transcription	HSMM	muscle
22	chr19:42831200-42838000	Weak transcription	Esophagus	oesophagus
23	chr19:42831200-42838600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr19:42831200-42839200	Weak transcription	Thymus	Thymus
25	chr19:42831200-42839800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr19:42831200-42840000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr19:42831200-42840200	Weak transcription	NHLF	lung
28	chr19:42831200-42847800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr19:42831200-42856600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:42831200-42856800	Weak transcription	Fetal Thymus	thymus
31	chr19:42831400-42837000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr19:42831400-42840400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr19:42831400-42840400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr19:42831400-42867400	Weak transcription	Fetal Heart	heart
35	chr19:42831400-42867400	Weak transcription	NHEK	skin
36	chr19:42831600-42837000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr19:42831600-42837200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr19:42831600-42838600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr19:42831600-42840000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr19:42831600-42840400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr19:42831600-42840600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr19:42831600-42840800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr19:42831600-42846200	Weak transcription	Primary T cells from cord blood	blood
44	chr19:42831600-42856400	Weak transcription	HMEC	breast
45	chr19:42831600-42856600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr19:42831600-42861800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:42831600-42882600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr19:42831800-42838000	Weak transcription	Right Ventricle	heart
49	chr19:42831800-42838600	Weak transcription	Liver	Liver
50	chr19:42831800-42840200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links