Variant report

Variant	rs1975993
Chromosome Location	chr8:20405806-20405807
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11991803	0.91[ASN][1000 genomes]
rs12543862	0.91[ASN][1000 genomes]
rs12545547	0.88[ASN][1000 genomes]
rs13273637	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1383247	0.86[ASN][1000 genomes]
rs17092725	0.81[ASN][1000 genomes]
rs17092753	0.91[ASN][1000 genomes]
rs17092760	0.91[ASN][1000 genomes]
rs17092762	0.91[ASN][1000 genomes]
rs17092764	0.91[ASN][1000 genomes]
rs17092765	0.91[ASN][1000 genomes]
rs17092766	0.88[ASN][1000 genomes]
rs2170173	0.91[ASN][1000 genomes]
rs4288392	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4307359	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4921722	0.87[ASN][1000 genomes]
rs4922214	0.84[ASN][1000 genomes]
rs6990841	0.91[ASN][1000 genomes]
rs6991023	0.89[ASN][1000 genomes]
rs73218499	0.83[ASN][1000 genomes]
rs73218500	0.83[ASN][1000 genomes]
rs73218501	0.83[ASN][1000 genomes]
rs73220413	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv916454	chr8:20342959-20531705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20404000-20406600	Enhancers	Primary T cells from cord blood	blood
2	chr8:20404400-20406600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr8:20404600-20406000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr8:20404600-20406200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:20404600-20406400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr8:20405600-20406000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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