The 2.0 version of rSNPBase

Variant report

Variant rs1978848
Chromosome Location chr12:29908046-29908047
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:29880000-29921200 Weak transcription Fetal Kidney kidney
2 chr12:29881600-29915800 Weak transcription Brain Substantia Nigra brain
3 chr12:29887400-29915600 Weak transcription Brain Angular Gyrus brain
4 chr12:29888800-29915600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr12:29890200-29915600 Weak transcription Brain Inferior Temporal Lobe brain
6 chr12:29890600-29913000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr12:29895000-29910000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr12:29897200-29916000 Weak transcription H9 Cell Line embryonic stem cell
9 chr12:29898000-29910000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr12:29898200-29915800 Weak transcription Liver Liver
11 chr12:29898600-29921200 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr12:29900600-29908400 Strong transcription Fetal Muscle Leg muscle
13 chr12:29901200-29915800 Weak transcription Brain Hippocampus Middle brain
14 chr12:29901600-29911600 Strong transcription Cortex derived primary cultured neurospheres brain
15 chr12:29902600-29915800 Weak transcription Duodenum Mucosa Duodenum
16 chr12:29903200-29911000 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr12:29903600-29915200 Weak transcription Fetal Brain Female brain
18 chr12:29903800-29915600 Weak transcription Brain Cingulate Gyrus brain
19 chr12:29904200-29908200 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr12:29904200-29916000 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr12:29904200-29928600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr12:29904400-29908600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr12:29904400-29915800 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr12:29904400-29916800 Weak transcription Gastric stomach
25 chr12:29904600-29927800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr12:29904800-29909600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr12:29904800-29911600 Weak transcription Primary monocytes fromperipheralblood blood
28 chr12:29904800-29915600 Weak transcription Esophagus oesophagus
29 chr12:29904800-29924200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr12:29905000-29915800 Weak transcription Lung lung
31 chr12:29905400-29908800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr12:29905600-29909600 Weak transcription NHLF lung
33 chr12:29905600-29915600 Weak transcription HSMMtube muscle
34 chr12:29905800-29909200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr12:29906000-29908800 Strong transcription HUES64 Cell Line embryonic stem cell
36 chr12:29906000-29908800 Strong transcription Skeletal Muscle Male skeletal muscle
37 chr12:29906000-29909600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr12:29906200-29908800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr12:29906200-29909400 Genic enhancers Breast Myoepithelial Primary Cells Breast
40 chr12:29906200-29911600 Strong transcription Aorta Aorta
41 chr12:29906400-29908200 Enhancers Fetal Heart heart
42 chr12:29906400-29909200 Strong transcription HSMM muscle
43 chr12:29906400-29909200 Weak transcription Osteobl bone
44 chr12:29906400-29910200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr12:29906400-29911000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr12:29906600-29909400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr12:29906600-29915600 Weak transcription Psoas Muscle Psoas
48 chr12:29906600-29928400 Weak transcription Fetal Muscle Trunk muscle
49 chr12:29906800-29908800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr12:29906800-29909600 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015