Variant report

Variant	rs1979221
Chromosome Location	chr8:126620703-126620704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126619050..126624593-chr8:126625487..126628558,5	MCF-7	breast:
2	chr8:126538658..126542290-chr8:126619301..126623874,4	MCF-7	breast:
3	chr8:126619990..126624184-chr8:126625667..126627988,3	K562	blood:
4	chr8:126620542..126623199-chr8:126642002..126644865,2	MCF-7	breast:
5	chr8:126440493..126443546-chr8:126619136..126621906,3	MCF-7	breast:
6	chr8:126605898..126607935-chr8:126618594..126621504,4	MCF-7	breast:
7	chr8:126615487..126618123-chr8:126620210..126621932,2	K562	blood:
8	chr8:126619524..126621490-chr8:126626488..126629333,2	K562	blood:
9	chr8:126618476..126621676-chr8:126622245..126624732,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4871622	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs897148	0.80[MEX][hapmap]
rs969584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126611800-126622600	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:126612200-126625400	Enhancers	Primary B cells from cord blood	blood
3	chr8:126613200-126621800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:126613600-126620800	Enhancers	HMEC	breast
5	chr8:126613600-126621000	Enhancers	NHEK	skin
6	chr8:126613800-126621000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:126616400-126621600	Enhancers	Placenta	Placenta
8	chr8:126616400-126622800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr8:126616800-126621600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr8:126616800-126621600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr8:126617400-126621600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:126617400-126621600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr8:126617800-126621000	Enhancers	Hela-S3	cervix
14	chr8:126618000-126621400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:126618400-126621400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:126618400-126621400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:126618600-126621400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr8:126618800-126627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:126619000-126621600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:126619400-126620800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr8:126619400-126621000	Flanking Active TSS	GM12878-XiMat	blood
22	chr8:126619400-126621400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr8:126619400-126621600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:126619600-126620800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:126619600-126620800	Enhancers	Brain Cingulate Gyrus	brain
26	chr8:126619600-126621000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:126619600-126621000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:126619600-126621000	Enhancers	Brain Substantia Nigra	brain
29	chr8:126619600-126621000	Enhancers	Fetal Muscle Leg	muscle
30	chr8:126619600-126621000	Enhancers	Fetal Thymus	thymus
31	chr8:126619600-126621200	Enhancers	Primary hematopoietic stem cells	blood
32	chr8:126619600-126621200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr8:126619600-126621400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:126619600-126621400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:126619600-126622000	Enhancers	Brain Anterior Caudate	brain
36	chr8:126619600-126622000	Enhancers	Brain Hippocampus Middle	brain
37	chr8:126619800-126620800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr8:126619800-126620800	Enhancers	Primary T cells from cord blood	blood
39	chr8:126619800-126620800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:126619800-126620800	Enhancers	Adipose Nuclei	Adipose
41	chr8:126619800-126620800	Enhancers	Duodenum Mucosa	Duodenum
42	chr8:126619800-126620800	Enhancers	Small Intestine	intestine
43	chr8:126619800-126620800	Enhancers	Stomach Mucosa	stomach
44	chr8:126619800-126620800	Enhancers	NH-A	brain
45	chr8:126619800-126621000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr8:126619800-126621000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:126619800-126621200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:126619800-126621400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:126619800-126621400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr8:126619800-126621400	Enhancers	Esophagus	oesophagus

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