Variant report

Variant	rs1979405
Chromosome Location	chr12:21495910-21495911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10459076	1.00[ASN][1000 genomes]
rs11045988	1.00[ASN][1000 genomes]
rs11836625	1.00[ASN][1000 genomes]
rs12307592	1.00[ASN][1000 genomes]
rs12320968	1.00[ASN][1000 genomes]
rs12811254	1.00[ASN][1000 genomes]
rs1871288	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2857468	1.00[ASN][1000 genomes]
rs5487	1.00[ASN][1000 genomes]
rs7138451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73069049	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21491200-21497800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr12:21491400-21499400	Weak transcription	Brain Anterior Caudate	brain
3	chr12:21492800-21496400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:21492800-21496600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:21492800-21497800	Weak transcription	Brain Substantia Nigra	brain
6	chr12:21493200-21496200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:21493200-21496600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr12:21493200-21496600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:21493400-21497800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:21495000-21499200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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