Variant report

Variant	rs1979890
Chromosome Location	chr15:82343468-82343469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1112988	0.84[ASN][1000 genomes]
rs11637633	0.80[ASN][1000 genomes]
rs12324764	0.82[ASN][1000 genomes]
rs12592956	0.81[ASN][1000 genomes]
rs1587706	0.84[ASN][1000 genomes]
rs1963263	0.84[ASN][1000 genomes]
rs1969091	0.88[ASN][1000 genomes]
rs4528531	0.84[ASN][1000 genomes]
rs4778961	0.83[ASN][1000 genomes]
rs6495636	0.83[ASN][1000 genomes]
rs6495637	0.83[ASN][1000 genomes]
rs6495638	0.84[ASN][1000 genomes]
rs7163642	0.80[ASN][1000 genomes]
rs7163710	0.80[ASN][1000 genomes]
rs7164615	0.80[ASN][1000 genomes]
rs7165730	0.81[ASN][1000 genomes]
rs7179070	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82340600-82344200	Weak transcription	Brain Substantia Nigra	brain
2	chr15:82343400-82349400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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