Variant report

Variant	rs1980446
Chromosome Location	chr1:186849084-186849085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10737272	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10911946	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17526478	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv947343	chr1:186846236-186851365	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186839200-186884800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:186840400-186849200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:186841000-186853600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:186841000-186853800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:186841600-186850200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:186841800-186850000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:186841800-186862400	Weak transcription	Hela-S3	cervix
8	chr1:186843400-186849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:186843400-186853800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:186844200-186851600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:186844400-186850200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:186845200-186851400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:186845200-186856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:186846200-186850000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:186846400-186849200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:186846600-186850200	Weak transcription	Adipose Nuclei	Adipose
17	chr1:186846600-186850200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:186846600-186851600	Weak transcription	NHDF-Ad	bronchial
19	chr1:186847800-186851200	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:186848000-186850000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:186848000-186856000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:186848200-186850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:186848400-186852600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:186848600-186851600	Enhancers	Colon Smooth Muscle	Colon
25	chr1:186849000-186849400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links