Variant report

Variant	rs1981058
Chromosome Location	chr13:39833403-39833404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7335974	0.97[EUR][1000 genomes]
rs8253	0.81[MEX][hapmap]
rs9315669	0.93[EUR][1000 genomes]
rs9576768	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576769	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900007	chr13:39801283-39849423	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1981058	SNORA32	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39825000-39833600	Weak transcription	Fetal Stomach	stomach
2	chr13:39831600-39837000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:39831800-39834800	Weak transcription	Psoas Muscle	Psoas
4	chr13:39831800-39834800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr13:39832200-39833600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:39832400-39833600	Weak transcription	Fetal Heart	heart
7	chr13:39832400-39833600	Weak transcription	Ovary	ovary
8	chr13:39832400-39833600	Weak transcription	Right Atrium	heart
9	chr13:39832400-39837000	Weak transcription	Adipose Nuclei	Adipose
10	chr13:39832400-39837000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr13:39832600-39833600	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:39832600-39833600	Weak transcription	Left Ventricle	heart
13	chr13:39832600-39833600	Weak transcription	Right Ventricle	heart
14	chr13:39833000-39834200	Enhancers	GM12878-XiMat	blood
15	chr13:39833400-39837600	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links