Variant report

Variant	rs1981844
Chromosome Location	chr5:37845143-37845144
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37839871..37842417-chr5:37842756..37845550,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248587	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1423429	0.99[ASN][1000 genomes]
rs1423451	0.97[ASN][1000 genomes]
rs2910693	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910695	0.99[ASN][1000 genomes]
rs2910696	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910697	0.90[JPT][hapmap]
rs2910704	0.80[CEU][hapmap]
rs2910756	0.95[ASN][1000 genomes]
rs2910761	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910762	0.97[ASN][1000 genomes]
rs2973033	0.95[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2973042	0.80[CEU][hapmap]
rs2973113	0.95[ASN][1000 genomes]
rs2973116	0.96[ASN][1000 genomes]
rs2973123	1.00[ASN][1000 genomes]
rs2975100	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37841000-37850400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:37841200-37848000	Weak transcription	Psoas Muscle	Psoas
3	chr5:37841400-37848000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:37841600-37846800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:37841600-37847000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:37841600-37847600	Weak transcription	HMEC	breast
7	chr5:37841800-37846600	Weak transcription	NHEK	skin
8	chr5:37842600-37848000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:37843600-37845400	Enhancers	Fetal Stomach	stomach
10	chr5:37843800-37848800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:37844400-37847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:37844400-37847800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:37844600-37846400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:37844600-37846400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:37844600-37846400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:37844600-37846600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:37844600-37847200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:37844600-37853000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:37844800-37845200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:37844800-37845600	Enhancers	HUES48 Cell Line	embryonic stem cell

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