Variant report

Variant	rs1983810
Chromosome Location	chr9:21552654-21552655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1545749	0.85[EUR][1000 genomes]
rs1983811	0.85[EUR][1000 genomes]
rs9657572	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21545600-21555600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:21546400-21553600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:21547000-21553400	Transcr. at gene 5' and 3'	HMEC	breast
4	chr9:21548400-21553800	Enhancers	Stomach Mucosa	stomach
5	chr9:21548400-21553800	Transcr. at gene 5' and 3'	NHEK	skin
6	chr9:21548400-21558200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:21548800-21552800	Enhancers	Fetal Intestine Small	intestine
8	chr9:21549400-21553800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:21549600-21552800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:21549800-21553000	Enhancers	NHDF-Ad	bronchial
11	chr9:21550000-21552800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:21550000-21553600	Transcr. at gene 5' and 3'	A549	lung
13	chr9:21550200-21553000	Enhancers	HUVEC	blood vessel
14	chr9:21550600-21554200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:21550800-21553000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:21550800-21554200	Enhancers	Fetal Intestine Large	intestine
17	chr9:21551000-21553200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:21551000-21553200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:21551400-21553400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr9:21551600-21552800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr9:21551600-21553200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr9:21551800-21552800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr9:21551800-21552800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:21551800-21552800	Flanking Active TSS	NH-A	brain
25	chr9:21551800-21553600	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:21551800-21554800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr9:21552000-21553000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr9:21552200-21552800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:21552200-21552800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:21552200-21552800	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr9:21552200-21552800	Flanking Active TSS	NHLF	lung
32	chr9:21552200-21553000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
33	chr9:21552200-21553000	Flanking Active TSS	Hela-S3	cervix
34	chr9:21552200-21553400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:21552400-21552800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr9:21552400-21553000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:21552600-21553000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:21552600-21553000	Strong transcription	HSMM	muscle
39	chr9:21552600-21554400	Genic enhancers	Osteobl	bone
40	chr9:21552600-21558600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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