Variant report
| Variant | rs1984428 |
|---|---|
| Chromosome Location | chr8:91887985-91887986 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:91656405..91658231-chr8:91885900..91888431,2 | MCF-7 | breast: | |
| 2 | chr8:91870965..91873678-chr8:91886329..91888682,2 | K562 | blood: | |
| 3 | chr8:91865391..91867140-chr8:91886404..91889323,2 | MCF-7 | breast: | |
| 4 | chr8:91887786..91890110-chr8:91890462..91892289,2 | MCF-7 | breast: | |
| 5 | chr8:91874085..91876434-chr8:91887790..91890517,2 | MCF-7 | breast: | |
| 6 | chr8:91885884..91888483-chr8:91901154..91903670,2 | K562 | blood: | |
| 7 | chr8:91872388..91875326-chr8:91885737..91888415,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254251 | Chromatin interaction |
| ENSG00000180694 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10808631 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13261725 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13268798 | 0.81[EUR][1000 genomes] |
| rs13279759 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1354517 | 0.81[EUR][1000 genomes] |
| rs1354518 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1486465 | 0.88[EUR][1000 genomes] |
| rs1486466 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1604917 | 0.82[AMR][1000 genomes] |
| rs1604919 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs16905567 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs16905571 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1857752 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1982785 | 0.81[EUR][1000 genomes] |
| rs2129260 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35234301 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs35918434 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4517081 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4735418 | 0.80[EUR][1000 genomes] |
| rs4735428 | 0.81[EUR][1000 genomes] |
| rs6471261 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6471262 | 0.81[EUR][1000 genomes] |
| rs6986276 | 0.80[EUR][1000 genomes] |
| rs6999838 | 0.81[EUR][1000 genomes] |
| rs7813402 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs901382 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:91876800-91901000 | Weak transcription | Aorta | Aorta |
| 2 | chr8:91886400-91890000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
