Variant report

Variant	rs1984667
Chromosome Location	chr17:34078471-34078472
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11650416	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1984667	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34071000-34079800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:34077200-34079400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr17:34077400-34078800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:34077400-34079400	Weak transcription	Pancreas	Pancrea
5	chr17:34077600-34079400	Weak transcription	Right Atrium	heart
6	chr17:34077800-34079200	Weak transcription	A549	lung
7	chr17:34077800-34079400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr17:34077800-34079800	Weak transcription	Right Ventricle	heart
9	chr17:34078000-34079000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:34078000-34079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:34078000-34079800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr17:34078200-34078600	Enhancers	Adipose Nuclei	Adipose
13	chr17:34078200-34079200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:34078200-34079400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr17:34078400-34079400	Weak transcription	Esophagus	oesophagus
16	chr17:34078400-34079400	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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