Variant report

Variant	rs1984791
Chromosome Location	chr11:9035027-9035028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9020957..9023609-chr11:9034116..9037224,3	K562	blood:
2	chr11:9034413..9036493-chr11:9139269..9141678,2	K562	blood:
3	chr11:9029342..9032817-chr11:9034823..9038616,4	K562	blood:
4	chr11:9034962..9037892-chr11:9111101..9113164,2	MCF-7	breast:
5	chr11:9033737..9035999-chr11:9038793..9040438,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175356	Chromatin interaction
ENSG00000264984	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10743093	0.81[JPT][hapmap]
rs10769970	0.81[JPT][hapmap]
rs10769971	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs10769973	0.81[JPT][hapmap]
rs10769979	0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs10769980	0.86[ASN][1000 genomes]
rs10840141	0.81[JPT][hapmap]
rs10840142	0.81[JPT][hapmap]
rs10840147	0.81[JPT][hapmap]
rs10840148	0.81[JPT][hapmap]
rs10840157	0.85[ASN][1000 genomes]
rs10840158	0.86[ASN][1000 genomes]
rs10840160	0.83[CHB][hapmap];0.80[CHD][hapmap];0.82[ASN][1000 genomes]
rs11042103	0.80[JPT][hapmap]
rs11042125	0.85[JPT][hapmap];0.82[MEX][hapmap]
rs11042151	0.83[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap]
rs11042152	0.86[ASN][1000 genomes]
rs11042154	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs1560569	0.81[JPT][hapmap]
rs1980429	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2012680	0.84[ASN][1000 genomes]
rs2012690	0.84[ASN][1000 genomes]
rs2012696	0.85[ASN][1000 genomes]
rs2016942	0.85[JPT][hapmap];0.82[MEX][hapmap]
rs2568020	0.85[ASN][1000 genomes]
rs2653570	0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2653605	0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2742471	0.87[ASN][1000 genomes]
rs2742474	0.87[ASN][1000 genomes]
rs2742480	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4909952	0.84[JPT][hapmap]
rs4910062	1.00[YRI][hapmap]
rs4910442	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs4929922	0.85[JPT][hapmap]
rs7479407	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs7482838	0.87[ASN][1000 genomes]
rs7484180	0.87[ASN][1000 genomes]
rs7925728	0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.86[ASN][1000 genomes]
rs7930026	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1984791	TRIM66	cis	parietal	SCAN
rs1984791	NRIP3	cis	parietal	SCAN
rs1984791	OR52N4	cis	cerebellum	SCAN
rs1984791	WEE1	cis	parietal	SCAN
rs1984791	C11orf17	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9026200-9038800	Weak transcription	Right Atrium	heart
2	chr11:9026400-9037400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:9034600-9041600	Weak transcription	Gastric	stomach
4	chr11:9035000-9035200	Weak transcription	Pancreas	Pancrea

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