Variant report

Variant	rs1984854
Chromosome Location	chr4:152787549-152787550
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152783651..152785975-chr4:152786154..152789103,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11099832	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11099833	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11723898	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11724664	0.82[AMR][1000 genomes]
rs13109860	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145151	0.90[EUR][1000 genomes]
rs1872513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2007237	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2062329	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3885815	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4696300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4696301	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4696302	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4696304	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2753949	chr4:152764038-152794700	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2757086	chr4:152776271-152809738	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759289	chr4:152776271-152809738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv16590	chr4:152778545-152790136	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1030973	chr4:152779838-152792879	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152779000-152788600	Weak transcription	Pancreas	Pancrea
2	chr4:152780800-152789000	Enhancers	Fetal Brain Male	brain
3	chr4:152781200-152794800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:152785200-152789400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:152785800-152788600	Enhancers	Fetal Thymus	thymus
6	chr4:152786000-152788000	Enhancers	Fetal Heart	heart
7	chr4:152786000-152789000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:152786000-152789000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr4:152786200-152787600	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:152786200-152787800	Enhancers	Brain Anterior Caudate	brain
11	chr4:152786200-152787800	Enhancers	Left Ventricle	heart
12	chr4:152786200-152789200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:152786400-152787600	Enhancers	Colon Smooth Muscle	Colon
14	chr4:152786400-152788000	Enhancers	Primary B cells from cord blood	blood
15	chr4:152786400-152788000	Enhancers	Fetal Muscle Leg	muscle
16	chr4:152786400-152788600	Enhancers	Thymus	Thymus
17	chr4:152786400-152788800	Enhancers	Fetal Brain Female	brain
18	chr4:152786600-152787600	Enhancers	Right Ventricle	heart
19	chr4:152786600-152788400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:152786800-152787800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:152786800-152788000	Enhancers	HSMMtube	muscle
22	chr4:152787400-152787600	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr4:152787400-152787600	Flanking Active TSS	Dnd41	blood
24	chr4:152787400-152787800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links