Variant report

Variant	rs1985432
Chromosome Location	chr5:36066692-36066693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs62352048	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62353824	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62353841	1.00[ASN][1000 genomes]
rs62353842	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62354196	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36061400-36071000	Weak transcription	Dnd41	blood
2	chr5:36065000-36067400	Flanking Active TSS	Fetal Thymus	thymus
3	chr5:36065800-36067200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr5:36066000-36067200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr5:36066000-36067400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:36066000-36067400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:36066200-36066800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr5:36066200-36067000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:36066200-36067000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
10	chr5:36066200-36067000	Enhancers	Pancreas	Pancrea
11	chr5:36066200-36067200	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr5:36066200-36067200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr5:36066200-36067200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr5:36066200-36067200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:36066200-36067200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:36066200-36067200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:36066200-36067200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr5:36066200-36067200	Bivalent/Poised TSS	Fetal Kidney	kidney
19	chr5:36066200-36067200	Enhancers	Spleen	Spleen
20	chr5:36066200-36067400	Active TSS	H9 Cell Line	embryonic stem cell
21	chr5:36066200-36067400	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr5:36066200-36067400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
23	chr5:36066200-36067600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:36066200-36067600	Enhancers	Fetal Heart	heart
25	chr5:36066400-36066800	Bivalent/Poised TSS	Fetal Brain Female	brain
26	chr5:36066400-36066800	Enhancers	Psoas Muscle	Psoas
27	chr5:36066400-36067000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:36066400-36067000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:36066400-36067000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:36066400-36067000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
31	chr5:36066400-36067000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr5:36066400-36067200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:36066400-36067200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:36066400-36067200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:36066400-36067200	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr5:36066400-36067200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:36066400-36067200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
38	chr5:36066400-36067400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr5:36066400-36067600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
40	chr5:36066400-36067600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:36066400-36068000	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr5:36066600-36066800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:36066600-36066800	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:36066600-36066800	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
45	chr5:36066600-36066800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:36066600-36066800	Enhancers	Liver	Liver
47	chr5:36066600-36066800	Bivalent Enhancer	Brain Hippocampus Middle	brain
48	chr5:36066600-36066800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:36066600-36066800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
50	chr5:36066600-36066800	Flanking Active TSS	Thymus	Thymus

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