Variant report

Variant	rs198615
Chromosome Location	chr13:48944730-48944731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48930300..48933269-chr13:48943996..48945535,2	MCF-7	breast:

rs_ID	r²[population]
rs198559	0.86[AFR][1000 genomes]
rs198616	0.82[AFR][1000 genomes]
rs198628	0.82[AFR][1000 genomes]
rs198632	0.82[AFR][1000 genomes]
rs2804082	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs2804085	0.87[AFR][1000 genomes]
rs2804086	0.86[AFR][1000 genomes]
rs4151458	1.00[CEU][hapmap]
rs9562817	0.84[YRI][hapmap];0.82[AFR][1000 genomes]

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48908400-48944800	Weak transcription	Small Intestine	intestine
2	chr13:48909000-48972200	Weak transcription	NHEK	skin
3	chr13:48911800-48948400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:48914000-48965800	Weak transcription	Lung	lung
6	chr13:48914800-48972000	Weak transcription	NHLF	lung
7	chr13:48916200-48947400	Weak transcription	Fetal Brain Male	brain
8	chr13:48916400-48948400	Weak transcription	NH-A	brain
9	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
10	chr13:48918000-48954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr13:48920200-48974400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr13:48921600-48972000	Weak transcription	Stomach Mucosa	stomach
14	chr13:48925000-48962800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr13:48925200-48947400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:48925200-48949000	Weak transcription	Fetal Kidney	kidney
17	chr13:48925200-48974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr13:48925400-48948200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr13:48925400-48976400	Weak transcription	Ovary	ovary
20	chr13:48925600-48968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:48926200-48949200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:48926200-48954600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr13:48926800-48972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr13:48928000-48948000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr13:48928200-48948400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr13:48928200-48948400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr13:48928200-48954400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr13:48928200-48954600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr13:48928200-48971800	Weak transcription	A549	lung
30	chr13:48928400-48952800	Weak transcription	Fetal Heart	heart
31	chr13:48928400-48963800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr13:48929400-48948400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr13:48929800-48968400	Weak transcription	Esophagus	oesophagus
34	chr13:48932200-48948400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr13:48932600-48948400	Weak transcription	GM12878-XiMat	blood
36	chr13:48932600-48957600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr13:48932800-48957400	Weak transcription	Brain Substantia Nigra	brain
38	chr13:48933200-48954400	Weak transcription	Colon Smooth Muscle	Colon
39	chr13:48933400-48974000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr13:48934000-48945000	Strong transcription	Dnd41	blood
41	chr13:48934400-48948400	Weak transcription	Thymus	Thymus
42	chr13:48934600-48984200	Weak transcription	Right Ventricle	heart
43	chr13:48934800-48948000	Weak transcription	Fetal Lung	lung
44	chr13:48934800-48948200	Weak transcription	Brain Hippocampus Middle	brain
45	chr13:48934800-48949000	Weak transcription	Fetal Intestine Large	intestine
46	chr13:48935000-48948400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr13:48935400-48968200	Weak transcription	Spleen	Spleen
48	chr13:48936000-48974600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr13:48936200-48968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:48936400-48973200	Weak transcription	Hela-S3	cervix

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