Variant report

Variant	rs198655
Chromosome Location	chr6:143171079-143171080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143169186..143172085-chr6:143184516..143186851,2	MCF-7	breast:
2	chr6:143169473..143172002-chr6:143172419..143174158,2	MCF-7	breast:
3	chr6:143168758..143171747-chr6:143172682..143174626,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs198649	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143167000-143171400	Enhancers	Primary B cells from cord blood	blood
2	chr6:143167200-143172800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:143167200-143172800	Enhancers	Adipose Nuclei	Adipose
4	chr6:143167200-143177000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:143167400-143172000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:143167400-143172600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:143167400-143175000	Weak transcription	Right Ventricle	heart
8	chr6:143167600-143171800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:143167600-143172000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr6:143167800-143171200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:143167800-143174800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:143167800-143176600	Enhancers	Primary T cells from cord blood	blood
13	chr6:143168200-143171800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:143168200-143176000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:143168400-143171600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:143168400-143171800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:143168400-143171800	Weak transcription	Left Ventricle	heart
18	chr6:143168400-143172000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:143168400-143172000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:143168400-143172200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:143168400-143172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:143168400-143172200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:143168400-143173400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:143168400-143174400	Weak transcription	Lung	lung
25	chr6:143168400-143174400	Weak transcription	Pancreas	Pancrea
26	chr6:143168400-143174800	Weak transcription	Right Atrium	heart
27	chr6:143168400-143174800	Weak transcription	Spleen	Spleen
28	chr6:143168400-143175200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:143168400-143175200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:143168400-143175600	Weak transcription	Dnd41	blood
31	chr6:143168400-143176200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:143168400-143177400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:143168400-143177600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:143168400-143178600	Weak transcription	Fetal Stomach	stomach
35	chr6:143168400-143179000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:143168400-143179400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:143168400-143188600	Weak transcription	Aorta	Aorta
38	chr6:143168600-143171600	Weak transcription	HepG2	liver
39	chr6:143168600-143172200	Weak transcription	A549	lung
40	chr6:143168600-143172800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:143168600-143172800	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:143168600-143173200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr6:143168600-143173600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:143168800-143171400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:143168800-143171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:143168800-143171600	Weak transcription	HMEC	breast
47	chr6:143168800-143171800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:143168800-143171800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:143168800-143171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:143168800-143171800	Weak transcription	Fetal Brain Male	brain

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