Variant report

Variant	rs198661
Chromosome Location	chr6:143183694-143183695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143181658..143183729-chr6:143211495..143213124,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11155265	0.84[EUR][1000 genomes]
rs11969311	0.82[EUR][1000 genomes]
rs12190804	0.86[EUR][1000 genomes]
rs12192692	0.86[EUR][1000 genomes]
rs12194338	0.80[EUR][1000 genomes]
rs12194808	0.86[EUR][1000 genomes]
rs12196693	0.86[EUR][1000 genomes]
rs12199711	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12201734	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12201987	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12203708	0.86[EUR][1000 genomes]
rs12205948	0.86[EUR][1000 genomes]
rs12206012	0.86[EUR][1000 genomes]
rs12208876	0.82[EUR][1000 genomes]
rs12210048	0.83[EUR][1000 genomes]
rs12210301	0.80[EUR][1000 genomes]
rs12214573	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17444447	0.86[EUR][1000 genomes]
rs2142938	0.86[EUR][1000 genomes]
rs2876528	0.86[EUR][1000 genomes]
rs4349826	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4492208	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62430709	0.86[EUR][1000 genomes]
rs62430712	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62430713	0.81[EUR][1000 genomes]
rs62432360	0.82[EUR][1000 genomes]
rs62432362	0.82[EUR][1000 genomes]
rs6910072	0.80[EUR][1000 genomes]
rs6927858	0.80[EUR][1000 genomes]
rs728589	0.86[EUR][1000 genomes]
rs72990282	0.80[EUR][1000 genomes]
rs972119	0.86[EUR][1000 genomes]
rs998313	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3383956	chr6:143182909-143185432	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3400674	chr6:143183159-143184907	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143168400-143188600	Weak transcription	Aorta	Aorta
2	chr6:143173200-143188600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143173600-143188200	Weak transcription	NHLF	lung
4	chr6:143175400-143185200	Weak transcription	Right Atrium	heart
5	chr6:143175600-143192000	Weak transcription	NHEK	skin
6	chr6:143175600-143192200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143175600-143192800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:143176200-143185000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:143176600-143185200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:143176600-143186800	Weak transcription	Esophagus	oesophagus
11	chr6:143176600-143188200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:143176600-143192400	Weak transcription	NHDF-Ad	bronchial
13	chr6:143177000-143192200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:143177800-143185000	Weak transcription	Fetal Kidney	kidney
15	chr6:143178000-143184800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:143178200-143192800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:143178800-143184800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:143179000-143184800	Weak transcription	Brain Substantia Nigra	brain
19	chr6:143179400-143184800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:143179400-143184800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:143179400-143184800	Weak transcription	Psoas Muscle	Psoas
22	chr6:143179400-143186000	Weak transcription	Brain Germinal Matrix	brain
23	chr6:143179400-143188400	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:143179600-143185200	Weak transcription	Brain Anterior Caudate	brain
25	chr6:143179600-143185200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:143179600-143185200	Weak transcription	Left Ventricle	heart
27	chr6:143179600-143185200	Weak transcription	Pancreas	Pancrea
28	chr6:143179600-143187000	Weak transcription	Fetal Stomach	stomach
29	chr6:143179600-143187800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:143179600-143188000	Weak transcription	HSMMtube	muscle
31	chr6:143179600-143188600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:143179600-143188600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:143179600-143189200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:143179600-143191200	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:143179600-143195000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:143179600-143195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:143179800-143188000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:143180600-143188600	Weak transcription	Fetal Thymus	thymus
39	chr6:143180600-143193000	Weak transcription	Thymus	Thymus
40	chr6:143180800-143186600	Weak transcription	Primary B cells from cord blood	blood
41	chr6:143182000-143185000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:143182200-143192800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:143182400-143184800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:143182400-143188400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:143182800-143188200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:143183000-143184800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:143183200-143184400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:143183200-143184600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:143183200-143184800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:143183200-143185000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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