Variant report

Variant	rs1986853
Chromosome Location	chr4:160473758-160473759
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11938135	0.91[EUR][1000 genomes]
rs1502724	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1502725	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038404	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038413	0.91[EUR][1000 genomes]
rs17038430	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038431	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038499	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6536443	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832563	1.00[ASN][1000 genomes]
rs6833888	0.91[EUR][1000 genomes]
rs998888	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160468600-160473800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:160470600-160478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160472400-160474200	Weak transcription	Pancreas	Pancrea
4	chr4:160473000-160476600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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