Variant report
| Variant | rs1987225 |
|---|---|
| Chromosome Location | chr2:125226863-125226864 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1425745 | 1.00[CEU][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap] |
| rs1504001 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes] |
| rs17011546 | 0.80[ASW][hapmap];1.00[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes] |
| rs17011550 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes] |
| rs17011561 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes] |
| rs17011578 | 1.00[CEU][hapmap] |
| rs2421084 | 0.80[ASW][hapmap];1.00[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes] |
| rs4411700 | 1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4468821 | 1.00[CEU][hapmap] |
| rs6706476 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6715476 | 1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap] |
| rs6757460 | 1.00[CEU][hapmap] |
| rs728049 | 0.89[AMR][1000 genomes] |
| rs72966683 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72966684 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72966690 | 0.89[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834355 | chr2:125128585-125291043 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
