Variant report

Variant	rs1987488
Chromosome Location	chr20:21883648-21883649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1000334	0.85[EUR][1000 genomes]
rs1014883	0.86[EUR][1000 genomes]
rs1014884	0.86[EUR][1000 genomes]
rs1014885	0.86[EUR][1000 genomes]
rs1155710	0.85[EUR][1000 genomes]
rs13039748	0.85[EUR][1000 genomes]
rs1474928	0.82[EUR][1000 genomes]
rs1535199	0.85[EUR][1000 genomes]
rs1535200	0.85[EUR][1000 genomes]
rs1535201	0.85[EUR][1000 genomes]
rs1535202	0.85[EUR][1000 genomes]
rs1998076	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2010733	0.85[EUR][1000 genomes]
rs2016964	0.85[EUR][1000 genomes]
rs2180438	0.86[EUR][1000 genomes]
rs2180439	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2208052	0.85[EUR][1000 genomes]
rs2328678	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2328679	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2876614	0.85[EUR][1000 genomes]
rs4405823	0.85[EUR][1000 genomes]
rs4544515	0.82[EUR][1000 genomes]
rs4815071	0.85[EUR][1000 genomes]
rs4815072	0.85[EUR][1000 genomes]
rs4815073	0.85[EUR][1000 genomes]
rs4815076	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815080	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815081	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815082	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6035961	0.85[EUR][1000 genomes]
rs6035968	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6035969	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6035970	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6035980	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6035982	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6047660	0.85[EUR][1000 genomes]
rs6047661	0.85[EUR][1000 genomes]
rs6047662	0.84[EUR][1000 genomes]
rs6047663	0.85[EUR][1000 genomes]
rs6047676	0.85[EUR][1000 genomes]
rs6047677	0.86[EUR][1000 genomes]
rs6047679	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047681	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047682	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047683	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047684	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047691	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047692	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047694	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6047705	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6047709	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6047713	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6075843	0.85[EUR][1000 genomes]
rs6075852	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6075853	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6075854	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6075855	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6082524	0.85[EUR][1000 genomes]
rs6082525	0.85[EUR][1000 genomes]
rs6082533	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6082540	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6082541	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6082553	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6106421	0.85[EUR][1000 genomes]
rs6113393	0.85[EUR][1000 genomes]
rs6113394	0.85[EUR][1000 genomes]
rs6113395	0.85[EUR][1000 genomes]
rs6113404	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6113413	0.84[EUR][1000 genomes]
rs6113414	0.84[EUR][1000 genomes]
rs6137473	0.82[EUR][1000 genomes]
rs718664	0.86[EUR][1000 genomes]
rs7261950	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs761890	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs761891	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs764777	0.85[EUR][1000 genomes]
rs8116929	0.85[EUR][1000 genomes]
rs8121238	0.86[EUR][1000 genomes]
rs8122229	0.85[EUR][1000 genomes]
rs932540	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs966604	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs987050	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs997078	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585714	chr20:21863397-21918447	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
4	nsv1061217	chr20:21875728-21906483	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21879400-21886400	Enhancers	Colon Smooth Muscle	Colon
2	chr20:21882200-21885000	Weak transcription	Rectal Smooth Muscle	rectum

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