Variant report

Variant	rs1987682
Chromosome Location	chr13:94101875-94101876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1445266	0.85[ASN][1000 genomes]
rs1445271	0.83[ASN][1000 genomes]
rs1445272	0.83[ASN][1000 genomes]
rs1445273	0.83[ASN][1000 genomes]
rs1445275	0.89[ASN][1000 genomes]
rs1900050	0.83[ASN][1000 genomes]
rs1924383	0.81[ASN][1000 genomes]
rs1947077	0.83[ASN][1000 genomes]
rs1947079	0.82[ASN][1000 genomes]
rs1987681	0.95[ASN][1000 genomes]
rs2590549	0.80[ASN][1000 genomes]
rs2590552	0.83[ASN][1000 genomes]
rs2590558	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2762082	0.85[ASN][1000 genomes]
rs2762092	0.85[ASN][1000 genomes]
rs2813618	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2813619	0.89[ASN][1000 genomes]
rs2813620	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813621	0.88[ASN][1000 genomes]
rs2813623	0.82[ASN][1000 genomes]
rs2813627	0.83[ASN][1000 genomes]
rs2813628	0.81[ASN][1000 genomes]
rs2813631	0.86[ASN][1000 genomes]
rs2813636	0.83[ASN][1000 genomes]
rs2999497	0.92[ASN][1000 genomes]
rs2999498	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2999500	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2999501	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72640517	0.81[ASN][1000 genomes]
rs7338402	0.85[ASN][1000 genomes]
rs895193	0.83[ASN][1000 genomes]
rs895194	0.83[ASN][1000 genomes]
rs9301881	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9524061	0.85[ASN][1000 genomes]
rs9524070	0.89[ASN][1000 genomes]
rs9524075	0.83[ASN][1000 genomes]
rs9556291	0.89[ASN][1000 genomes]
rs9561347	0.81[ASN][1000 genomes]
rs973302	0.89[ASN][1000 genomes]
rs974542	0.83[ASN][1000 genomes]
rs974543	0.83[ASN][1000 genomes]
rs974544	0.83[ASN][1000 genomes]
rs996460	0.83[ASN][1000 genomes]
rs996461	0.81[ASN][1000 genomes]
rs996462	0.81[ASN][1000 genomes]
rs996463	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1048843	chr13:94064931-94103524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900920	chr13:94088707-94151937	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv1842896	chr13:94095160-94153194	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94092800-94104800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94099000-94102600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:94101800-94103000	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links