The 2.0 version of rSNPBase

Variant report

Variant rs1990534
Chromosome Location chr12:9966566-9966567
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:9966200-9966600 Flanking Active TSS Primary T cells from cord blood blood
2 chr12:9966200-9966600 Enhancers Small Intestine intestine
3 chr12:9966200-9966800 Flanking Active TSS Primary B cells from cord blood blood
4 chr12:9966200-9966800 Flanking Bivalent TSS/Enh Primary T cells fromperipheralblood blood
5 chr12:9966200-9966800 Flanking Active TSS Primary hematopoietic stem cells blood
6 chr12:9966200-9966800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
7 chr12:9966200-9966800 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
8 chr12:9966200-9966800 Flanking Active TSS Thymus Thymus
9 chr12:9966200-9967000 Flanking Active TSS Primary monocytes fromperipheralblood blood
10 chr12:9966200-9967000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
11 chr12:9966200-9967000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
12 chr12:9966200-9967000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
13 chr12:9966200-9967000 Active TSS Primary T killer memory cells from peripheral blood blood
14 chr12:9966200-9967000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr12:9966200-9967000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr12:9966200-9967000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr12:9966200-9967000 Flanking Active TSS Fetal Thymus thymus
18 chr12:9966200-9967000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
19 chr12:9966200-9967200 Active TSS iPS-15b Cell Line embryonic stem cell
20 chr12:9966200-9967200 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
21 chr12:9966400-9966600 Enhancers ES-WA7 Cell Line embryonic stem cell
22 chr12:9966400-9966600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr12:9966400-9966600 Active TSS HUES6 Cell Line embryonic stem cell
24 chr12:9966400-9966600 Bivalent Enhancer IMR90 fetal lung fibroblasts Cell Line lung
25 chr12:9966400-9966600 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
26 chr12:9966400-9966600 Active TSS Primary T helper naive cells fromperipheralblood blood
27 chr12:9966400-9966600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
28 chr12:9966400-9966600 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
29 chr12:9966400-9966600 Enhancers Liver Liver
30 chr12:9966400-9966600 Bivalent Enhancer Fetal Intestine Small intestine
31 chr12:9966400-9966600 Enhancers Placenta Placenta
32 chr12:9966400-9966600 Bivalent Enhancer Right Ventricle heart
33 chr12:9966400-9966600 Flanking Bivalent TSS/Enh A549 lung
34 chr12:9966400-9966600 Bivalent Enhancer HepG2 liver
35 chr12:9966400-9966600 Enhancers NHDF-Ad bronchial
36 chr12:9966400-9966800 Flanking Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr12:9966400-9966800 Active TSS iPS-18 Cell Line embryonic stem cell
38 chr12:9966400-9966800 Active TSS iPS-20b Cell Line embryonic stem cell
39 chr12:9966400-9966800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
40 chr12:9966400-9966800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
41 chr12:9966400-9966800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr12:9966400-9966800 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
43 chr12:9966400-9966800 Enhancers Placenta Amnion Placenta Amnion
44 chr12:9966400-9966800 Active TSS Rectal Mucosa Donor 31 rectum
45 chr12:9966400-9966800 Flanking Active TSS GM12878-XiMat blood
46 chr12:9966400-9966800 Active TSS K562 blood
47 chr12:9966400-9967000 Flanking Active TSS H1 Cell Line embryonic stem cell
48 chr12:9966400-9967000 Active TSS H9 Cell Line embryonic stem cell
49 chr12:9966400-9967000 Active TSS HUES48 Cell Line embryonic stem cell
50 chr12:9966400-9967000 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015