Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143322525..143325153-chr6:143327028..143328550,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1360738	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1831978	0.91[EUR][1000 genomes]
rs199249	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs199251	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs199253	0.89[ASN][1000 genomes]
rs199254	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs199255	0.90[EUR][1000 genomes]
rs2184360	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6570540	0.97[ASN][1000 genomes]
rs6570541	0.97[ASN][1000 genomes]
rs6570542	0.97[ASN][1000 genomes]
rs6570543	0.97[ASN][1000 genomes]
rs6570544	0.97[ASN][1000 genomes]
rs6901140	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7742621	0.97[ASN][1000 genomes]
rs7745580	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7759047	0.91[EUR][1000 genomes]
rs7767231	0.96[ASN][1000 genomes]
rs9321881	0.91[EUR][1000 genomes]
rs9321882	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9321883	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9496497	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1024486	chr6:143324036-143346704	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143323000-143324200	Weak transcription	Brain Substantia Nigra	brain

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