Variant report

Variant	rs1994983
Chromosome Location	chr4:21377097-21377098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12499967	0.82[AMR][1000 genomes]
rs1390259	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1390264	0.88[GIH][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes]
rs1390266	1.00[ASW][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.91[YRI][hapmap]
rs1495519	0.81[AMR][1000 genomes]
rs2322958	0.84[GIH][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes]
rs2322959	0.81[AMR][1000 genomes]
rs2323001	1.00[CEU][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35727536	0.85[EUR][1000 genomes]
rs4618301	0.85[CEU][hapmap]
rs4696976	0.81[AMR][1000 genomes]
rs7655472	0.81[AMR][1000 genomes]
rs7657161	0.81[AMR][1000 genomes]
rs7675173	0.84[GIH][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv4267	chr4:21364827-21381632	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3518950	chr4:21367904-21378002	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2649624	chr4:21368198-21377528	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3518951	chr4:21368404-21377902	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3518945	chr4:21368756-21377899	Enhancers	Chromatin interactive region	n/a	n/a	n/a
9	esv5703	chr4:21368877-21377181	Inactive region	Chromatin interactive region	n/a	n/a	n/a
10	esv2516407	chr4:21368879-21377911	Inactive region	Chromatin interactive region	n/a	n/a	n/a
11	nsv10462	chr4:21368962-21377681	Inactive region	Chromatin interactive region	n/a	n/a	n/a
12	nsv436413	chr4:21369080-21377643	Inactive region	Chromatin interactive region	n/a	n/a	n/a
13	nsv1001768	chr4:21371991-21388664	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv2760849	chr4:21372003-21386158	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1002862	chr4:21372271-21388664	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3467568	chr4:21374054-21378852	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3467569	chr4:21374054-21378852	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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