Variant report

Variant	rs1995224
Chromosome Location	chr6:119774463-119774464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119774448..119776826-chr6:119788102..119790606,2	MCF-7	breast:
2	chr6:119772222..119775042-chr6:119777092..119781550,4	K562	blood:
3	chr6:119773729..119776617-chr6:119785441..119787829,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAN1A1-1	chr6:119773712-119776358	ENSG00000249211
2	lnc-MAN1A1-1	chr6:119774358-119776358	XLOC_005819
3	lnc-MAN1A1-1	chr6:119773712-119776358	NONHSAT114717

No data

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11153815	0.81[AMR][1000 genomes]
rs11153826	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12528127	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12529667	0.82[CHB][hapmap]
rs12530171	0.82[CHB][hapmap]
rs1295380	0.83[CHB][hapmap]
rs1342313	0.82[AMR][1000 genomes]
rs1418376	0.81[AMR][1000 genomes]
rs1909506	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2066350	0.81[AMR][1000 genomes]
rs2066351	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2142885	0.83[CHB][hapmap]
rs2153825	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2295203	0.83[CHB][hapmap]
rs2299884	0.83[CHB][hapmap]
rs2357505	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4945638	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4946416	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4946421	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4946428	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4946430	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58391013	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6900388	0.82[AMR][1000 genomes]
rs6903680	0.83[CHB][hapmap]
rs6925366	0.85[AMR][1000 genomes]
rs6935847	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6936821	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72952941	0.82[AMR][1000 genomes]
rs7761301	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7774019	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7775421	0.82[CHB][hapmap]
rs885028	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9372531	0.81[AMR][1000 genomes]
rs9374786	0.82[CHB][hapmap]
rs9374789	0.82[CHB][hapmap]
rs9374797	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374798	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374799	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9374800	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9374801	0.90[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9374802	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9374803	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9385074	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9385075	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9387650	0.82[AMR][1000 genomes]
rs9387654	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9401149	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs998194	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119768200-119780400	Weak transcription	Aorta	Aorta
3	chr6:119768800-119775600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:119770400-119774600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:119770400-119774800	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:119770600-119776000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:119770800-119780000	Weak transcription	Gastric	stomach
8	chr6:119771400-119780000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:119772200-119774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:119774000-119775800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:119774200-119774600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:119774200-119774800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:119774200-119774800	ZNF genes & repeats	Spleen	Spleen
14	chr6:119774200-119775200	Enhancers	Fetal Brain Male	brain
15	chr6:119774200-119775600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:119774400-119774800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:119774400-119774800	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:119774400-119775000	Enhancers	Dnd41	blood
19	chr6:119774400-119775200	Enhancers	Brain Angular Gyrus	brain
20	chr6:119774400-119775600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:119774400-119776200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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