The 2.0 version of rSNPBase

Variant report

Variant rs199552789
Chromosome Location chr1:10678393-10678394
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10632600-10698000 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:10644200-10683400 Weak transcription K562 blood
3 chr1:10651600-10715800 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr1:10652400-10678400 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:10653600-10688600 Weak transcription Colon Smooth Muscle Colon
6 chr1:10654800-10691600 Weak transcription H9 Cell Line embryonic stem cell
7 chr1:10656800-10687200 Weak transcription Small Intestine intestine
8 chr1:10657600-10683200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr1:10657800-10683600 Weak transcription Primary monocytes fromperipheralblood blood
10 chr1:10657800-10684200 Weak transcription Colonic Mucosa Colon
11 chr1:10658200-10694400 Weak transcription Primary neutrophils fromperipheralblood blood
12 chr1:10658400-10688600 Weak transcription Fetal Lung lung
13 chr1:10658400-10691600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:10658800-10678400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:10659200-10687800 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr1:10659400-10684400 Weak transcription Dnd41 blood
17 chr1:10659600-10678400 Weak transcription Placenta Placenta
18 chr1:10659600-10683800 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:10659800-10690800 Weak transcription Primary hematopoietic stem cells blood
20 chr1:10660000-10682000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr1:10660000-10683600 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:10660000-10684200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:10660200-10684400 Weak transcription NHLF lung
24 chr1:10660200-10697600 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr1:10660400-10679000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:10660400-10679000 Weak transcription HMEC breast
27 chr1:10660400-10683800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:10661800-10678400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:10661800-10692000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:10662000-10678400 Weak transcription Duodenum Mucosa Duodenum
31 chr1:10662000-10682600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr1:10662000-10683000 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr1:10662200-10694400 Weak transcription HSMM muscle
34 chr1:10662400-10678600 Weak transcription Primary B cells from peripheral blood blood
35 chr1:10662400-10694400 Weak transcription Muscle Satellite Cultured Cells --
36 chr1:10663000-10678800 Weak transcription NHEK skin
37 chr1:10664400-10698000 Weak transcription Primary B cells from cord blood blood
38 chr1:10665800-10683000 Weak transcription Aorta Aorta
39 chr1:10666600-10678400 Weak transcription Stomach Smooth Muscle stomach
40 chr1:10666600-10683600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:10668200-10682600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:10669800-10686600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:10671600-10682400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:10671800-10683200 Weak transcription Osteobl bone
45 chr1:10672600-10694800 Strong transcription Fetal Intestine Small intestine
46 chr1:10673000-10688400 Weak transcription Fetal Heart heart
47 chr1:10673200-10682000 Weak transcription Left Ventricle heart
48 chr1:10673200-10682800 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:10673200-10688800 Weak transcription Psoas Muscle Psoas
50 chr1:10673600-10684000 Weak transcription HepG2 liver

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Last update: Aug 31, 2015