Variant report

Variant	rs199598100
Chromosome Location	chr1:179292592-179292593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179292048..179292984-chr1:179301093..179301884,3	MCF-7	breast:
2	chr1:179288088..179290753-chr1:179291190..179293971,2	K562	blood:
3	chr1:179279593..179281355-chr1:179292401..179294402,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv523708	chr1:179292000-179293511	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179263800-179304600	Weak transcription	Lung	lung
2	chr1:179263800-179306400	Weak transcription	Gastric	stomach
3	chr1:179264600-179304600	Weak transcription	Right Ventricle	heart
4	chr1:179264600-179310200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:179264600-179314000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:179264600-179314000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:179264800-179313800	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:179264800-179313800	Weak transcription	Fetal Brain Female	brain
9	chr1:179264800-179334200	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:179266400-179322800	Weak transcription	Small Intestine	intestine
11	chr1:179268400-179312000	Weak transcription	Fetal Thymus	thymus
12	chr1:179272600-179313800	Weak transcription	Brain Anterior Caudate	brain
13	chr1:179273000-179311600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:179273200-179294600	Weak transcription	Placenta	Placenta
15	chr1:179273800-179293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:179274600-179302400	Weak transcription	Left Ventricle	heart
17	chr1:179274600-179304400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr1:179274600-179306000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:179275600-179311600	Weak transcription	HUVEC	blood vessel
20	chr1:179276400-179306200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:179276600-179304800	Weak transcription	Pancreas	Pancrea
22	chr1:179276800-179295200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr1:179277600-179296400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:179280400-179296200	Weak transcription	NH-A	brain
25	chr1:179280400-179314000	Weak transcription	NHLF	lung
26	chr1:179280600-179292800	Weak transcription	NHDF-Ad	bronchial
27	chr1:179280600-179293400	Weak transcription	Osteobl	bone
28	chr1:179280600-179299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:179281200-179300200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:179282000-179313000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:179282200-179295200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr1:179282400-179292800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr1:179282400-179304200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:179282400-179313800	Weak transcription	HSMMtube	muscle
35	chr1:179282600-179293400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr1:179283000-179293400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr1:179283200-179298800	Weak transcription	HepG2	liver
38	chr1:179283200-179308600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:179283400-179292600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:179283800-179292600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:179286400-179313800	Weak transcription	Psoas Muscle	Psoas
42	chr1:179287200-179294800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr1:179287200-179297200	Weak transcription	Spleen	Spleen
44	chr1:179287400-179304400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr1:179287600-179299000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:179288400-179293400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:179289000-179299200	Weak transcription	Fetal Stomach	stomach
48	chr1:179290000-179297800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:179290200-179297800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr1:179290200-179297800	Weak transcription	Fetal Intestine Small	intestine

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