Variant report

Variant	rs199624945
Chromosome Location	chr21:39994697-39994698
allele	-/CACA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439673	chr21:39994174-39994735	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39989200-39997600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr21:39993200-39995600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr21:39993200-39996600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr21:39993800-39995600	Enhancers	HepG2	liver
5	chr21:39994400-39994800	Active TSS	Fetal Lung	lung
6	chr21:39994400-39994800	Enhancers	Spleen	Spleen
7	chr21:39994400-39995200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr21:39994400-39995200	ZNF genes & repeats	Fetal Kidney	kidney
9	chr21:39994400-39995200	Enhancers	Gastric	stomach
10	chr21:39994400-39995200	Enhancers	Pancreas	Pancrea
11	chr21:39994600-39995000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr21:39994600-39995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr21:39994600-39995600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr21:39994600-39996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr21:39994600-39996000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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