Variant report

Variant	rs199629366
Chromosome Location	chr2:152617603-152617604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:152615094..152617806-chr2:152640783..152643681,2	K562	blood:
2	chr2:152614524..152619932-chr2:152620577..152626819,11	K562	blood:
3	chr2:152616288..152619244-chr2:152629461..152632128,2	K562	blood:
4	chr2:152615094..152618024-chr2:152639649..152643681,5	K562	blood:
5	chr2:152615779..152617906-chr2:152682702..152684733,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv3414820	chr2:152616581-152618629	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2592137	chr2:152616645-152618365	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2026587	chr2:152617090-152617821	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3458503	chr2:152617171-152617699	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3493253	chr2:152617200-152617644	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3493256	chr2:152617201-152617693	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3493249	chr2:152617202-152617709	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3493255	chr2:152617218-152617640	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3458506	chr2:152617227-152617676	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3458505	chr2:152617229-152617671	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3493254	chr2:152617235-152617659	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3458504	chr2:152617242-152617631	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv4737	chr2:152617247-152617748	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3493251	chr2:152617249-152617647	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3371230	chr2:152617253-152617626	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3458502	chr2:152617274-152617609	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3493250	chr2:152617288-152617604	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv2473260	chr2:152617289-152617603	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3458509	chr2:152617289-152617617	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3493257	chr2:152617289-152617617	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1582698	chr2:152617301-152617616	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152595800-152620200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:152597200-152618400	Weak transcription	Aorta	Aorta
3	chr2:152598200-152618600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:152611000-152632400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:152611200-152617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:152611200-152620400	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:152611600-152622600	Enhancers	K562	blood
8	chr2:152612000-152622200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr2:152614600-152622000	Weak transcription	Fetal Lung	lung
10	chr2:152614600-152622200	Weak transcription	Left Ventricle	heart
11	chr2:152614600-152638000	Weak transcription	Pancreas	Pancrea
12	chr2:152615000-152622400	Weak transcription	Adipose Nuclei	Adipose
13	chr2:152615400-152622400	Weak transcription	Lung	lung
14	chr2:152615600-152623000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:152616200-152619200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:152616600-152620200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:152616800-152618000	Weak transcription	Psoas Muscle	Psoas
18	chr2:152616800-152619800	Weak transcription	Placenta	Placenta
19	chr2:152616800-152621400	Weak transcription	Fetal Stomach	stomach
20	chr2:152616800-152622200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:152616800-152644400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:152616800-152662400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:152617000-152620400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:152617000-152622200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:152617000-152622400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:152617000-152622400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:152617000-152623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:152617000-152632600	Weak transcription	Brain Hippocampus Middle	brain
29	chr2:152617000-152638000	Weak transcription	Esophagus	oesophagus
30	chr2:152617000-152669400	Weak transcription	Gastric	stomach
31	chr2:152617200-152618800	Enhancers	HepG2	liver
32	chr2:152617200-152619200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr2:152617200-152619600	Weak transcription	HSMMtube	muscle
34	chr2:152617200-152621200	Weak transcription	Primary T cells from cord blood	blood
35	chr2:152617200-152622200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:152617200-152622200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:152617200-152622200	Weak transcription	Right Atrium	heart
38	chr2:152617200-152622400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr2:152617200-152622400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:152617200-152622600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:152617200-152622800	Weak transcription	Brain Anterior Caudate	brain

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