Variant report

Variant	rs199649271
Chromosome Location	chr1:159013928-159013929
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv1797158	chr1:159012238-159019423	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	esv6708	chr1:159012332-159016796	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	esv13216	chr1:159012766-159019831	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv548045	chr1:159012772-159017922	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv825019	chr1:159012855-159019577	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv548046	chr1:159012904-159019102	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv3514666	chr1:159013428-159020276	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv548047	chr1:159013775-159018359	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv825032	chr1:159013914-159016984	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158980200-159025400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:158982600-159027400	Weak transcription	Fetal Kidney	kidney
3	chr1:158984200-159024200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:158984800-159027400	Weak transcription	Psoas Muscle	Psoas
5	chr1:158985400-159023800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:158986000-159016200	Weak transcription	Stomach Mucosa	stomach
7	chr1:158988200-159016600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:158988600-159024000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:158993000-159023200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr1:158997600-159017000	Strong transcription	Primary B cells from cord blood	blood
11	chr1:158998400-159024000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:158998600-159014600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:158998600-159015600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:158998800-159014000	Strong transcription	Primary T cells from cord blood	blood
15	chr1:158998800-159033800	Weak transcription	Fetal Brain Female	brain
16	chr1:158999000-159014400	Strong transcription	Fetal Intestine Large	intestine
17	chr1:158999000-159022800	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:158999200-159023800	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:159000000-159026200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:159000400-159014000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr1:159000400-159024200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:159000600-159014200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:159000600-159020200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:159000600-159023800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:159001000-159016000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr1:159001000-159016600	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:159001000-159027400	Weak transcription	Right Ventricle	heart
28	chr1:159001200-159014400	Strong transcription	Ovary	ovary
29	chr1:159001200-159017200	Strong transcription	HUVEC	blood vessel
30	chr1:159001400-159014200	Strong transcription	Adipose Nuclei	Adipose
31	chr1:159001400-159020200	Weak transcription	Brain Anterior Caudate	brain
32	chr1:159001400-159020200	Weak transcription	Gastric	stomach
33	chr1:159001400-159024200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr1:159001400-159036200	Weak transcription	Small Intestine	intestine
35	chr1:159001600-159028400	Strong transcription	Fetal Thymus	thymus
36	chr1:159003000-159022000	Weak transcription	Fetal Brain Male	brain
37	chr1:159003400-159021400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr1:159003400-159021400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:159004600-159022800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:159004800-159020200	Weak transcription	Colonic Mucosa	Colon
41	chr1:159005400-159014000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:159005400-159023200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr1:159005600-159027200	Weak transcription	Brain Angular Gyrus	brain
44	chr1:159006800-159024200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr1:159007200-159026800	Weak transcription	Pancreas	Pancrea
46	chr1:159009000-159023000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr1:159009000-159026400	Strong transcription	Dnd41	blood
48	chr1:159009200-159030400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:159009400-159016800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr1:159009400-159020200	Weak transcription	Fetal Intestine Small	intestine

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