Variant report

Variant	rs199651842
Chromosome Location	chr22:28249592-28249593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28248595..28250412-chr22:28253357..28255056,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv588878	chr22:28248840-28314113	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28238800-28255200	Weak transcription	Stomach Mucosa	stomach
2	chr22:28239200-28259400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr22:28239600-28250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr22:28240400-28254800	Strong transcription	Primary T cells from cord blood	blood
5	chr22:28240800-28258400	Strong transcription	Thymus	Thymus
6	chr22:28241200-28249600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr22:28241400-28257800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr22:28241400-28261600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr22:28241600-28258000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr22:28242000-28253400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr22:28242000-28259400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr22:28242200-28259000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr22:28242200-28259400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr22:28242400-28263200	Strong transcription	GM12878-XiMat	blood
15	chr22:28242600-28249600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr22:28242600-28249600	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr22:28242600-28258200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr22:28242600-28259200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr22:28242600-28259400	Strong transcription	NHEK	skin
20	chr22:28242800-28255200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr22:28242800-28259400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr22:28243200-28256400	Strong transcription	Primary B cells from cord blood	blood
23	chr22:28243800-28256200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr22:28243800-28259600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr22:28243800-28274000	Strong transcription	Dnd41	blood
26	chr22:28244000-28261800	Strong transcription	HMEC	breast
27	chr22:28244000-28263600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr22:28244200-28254200	Strong transcription	A549	lung
29	chr22:28244200-28264200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr22:28245000-28249800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr22:28245400-28250000	Strong transcription	Fetal Intestine Large	intestine
32	chr22:28245400-28255000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr22:28245800-28249600	Strong transcription	Colonic Mucosa	Colon
34	chr22:28246000-28252000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr22:28246200-28254000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr22:28246400-28249600	Strong transcription	Osteobl	bone
37	chr22:28246400-28254400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr22:28246400-28255000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr22:28246400-28259400	Strong transcription	Placenta	Placenta
40	chr22:28246600-28249600	Strong transcription	Brain Anterior Caudate	brain
41	chr22:28246600-28249800	Strong transcription	Brain Angular Gyrus	brain
42	chr22:28246600-28249800	Strong transcription	Esophagus	oesophagus
43	chr22:28246600-28249800	Strong transcription	Fetal Brain Female	brain
44	chr22:28246600-28253600	Strong transcription	Hela-S3	cervix
45	chr22:28246800-28249600	Strong transcription	Rectal Smooth Muscle	rectum
46	chr22:28246800-28249800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr22:28246800-28249800	Strong transcription	Aorta	Aorta
48	chr22:28246800-28251600	Weak transcription	Gastric	stomach
49	chr22:28246800-28258000	Strong transcription	Fetal Thymus	thymus
50	chr22:28246800-28258200	Strong transcription	NH-A	brain

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