Variant report

Variant	rs1996548
Chromosome Location	chr15:76511014-76511015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76506073..76507894-chr15:76510950..76513040,2	MCF-7	breast:
2	chr15:76510425..76512602-chr15:76513810..76515951,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11631935	1.00[AFR][1000 genomes]
rs11638882	1.00[AFR][1000 genomes]
rs4261493	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:76492800-76517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:76492800-76526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:76493600-76526400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:76497000-76518200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:76498200-76511600	Strong transcription	Primary T cells from cord blood	blood
8	chr15:76499200-76516800	Weak transcription	Brain Angular Gyrus	brain
9	chr15:76499200-76527400	Weak transcription	Fetal Brain Male	brain
10	chr15:76500600-76534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:76501200-76524200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:76501600-76512400	Strong transcription	HepG2	liver
13	chr15:76501600-76515600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:76501800-76517200	Weak transcription	Fetal Kidney	kidney
15	chr15:76502400-76516200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:76503600-76551400	Weak transcription	Small Intestine	intestine
17	chr15:76504200-76517000	Weak transcription	Fetal Heart	heart
18	chr15:76505800-76518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:76506000-76526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:76506200-76526800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:76506400-76525600	Weak transcription	Fetal Brain Female	brain
22	chr15:76506800-76516800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:76507200-76511200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:76507200-76516600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:76507200-76551400	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:76507400-76516800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:76507600-76516600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:76507600-76516600	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:76507800-76515600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:76508000-76515200	Weak transcription	Ovary	ovary
31	chr15:76508000-76525000	Weak transcription	NHLF	lung
32	chr15:76508000-76525400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:76508200-76512200	Weak transcription	Fetal Thymus	thymus
34	chr15:76508200-76514800	Weak transcription	Aorta	Aorta
35	chr15:76508200-76515200	Weak transcription	Thymus	Thymus
36	chr15:76508200-76515400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:76508200-76515600	Weak transcription	Right Ventricle	heart
38	chr15:76508200-76515800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:76508200-76521400	Weak transcription	NHDF-Ad	bronchial
40	chr15:76508400-76515000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr15:76508400-76515800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:76508400-76516000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:76508400-76516800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:76508400-76546000	Weak transcription	Brain Anterior Caudate	brain
45	chr15:76508600-76512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:76508600-76512200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:76508600-76512800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:76508600-76514800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr15:76508600-76515800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:76508600-76516400	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links