Variant report

Variant	rs199672078
Chromosome Location	chr17:17137530-17137531
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17121039..17123215-chr17:17134749..17137620,2	K562	blood:

Variant related genes	Relation type
ENSG00000154803	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065811	chr17:17104760-17225204	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv1004208	chr17:17136933-17147885	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17113800-17137600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr17:17115200-17139600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:17126200-17138600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:17128600-17138800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:17129400-17138800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr17:17130000-17139000	Weak transcription	Fetal Kidney	kidney
7	chr17:17130600-17138600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:17132400-17138800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr17:17133400-17138600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:17133400-17138600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr17:17133600-17138600	Weak transcription	K562	blood
12	chr17:17133600-17138800	Weak transcription	Stomach Mucosa	stomach
13	chr17:17135000-17138800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr17:17135200-17138800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:17135400-17138600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:17135400-17138800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:17135400-17138800	Weak transcription	HUVEC	blood vessel
18	chr17:17135400-17139000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr17:17135400-17139400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr17:17135600-17138600	Weak transcription	Fetal Lung	lung
21	chr17:17135600-17138800	Weak transcription	Fetal Brain Male	brain
22	chr17:17135600-17139000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr17:17135800-17138600	Weak transcription	HSMM	muscle
24	chr17:17135800-17138800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:17135800-17138800	Weak transcription	Esophagus	oesophagus
26	chr17:17135800-17138800	Weak transcription	Right Ventricle	heart
27	chr17:17135800-17138800	Weak transcription	Thymus	Thymus
28	chr17:17136000-17138600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr17:17136000-17138600	Weak transcription	Fetal Brain Female	brain
30	chr17:17136000-17138800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr17:17136000-17138800	Weak transcription	Colonic Mucosa	Colon
32	chr17:17136000-17138800	Weak transcription	Psoas Muscle	Psoas
33	chr17:17136000-17138800	Weak transcription	Small Intestine	intestine
34	chr17:17136200-17137600	Weak transcription	Pancreas	Pancrea
35	chr17:17136200-17138000	Strong transcription	Fetal Intestine Small	intestine
36	chr17:17136200-17138400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr17:17136200-17138400	Weak transcription	Spleen	Spleen
38	chr17:17136200-17138600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr17:17136200-17138600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr17:17136200-17138600	Weak transcription	Primary B cells from cord blood	blood
41	chr17:17136200-17138600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr17:17136200-17138600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr17:17136200-17138600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr17:17136200-17138600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr17:17136200-17138600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr17:17136200-17138600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr17:17136200-17138600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr17:17136200-17138600	Enhancers	HepG2	liver
49	chr17:17136200-17138600	Weak transcription	NH-A	brain
50	chr17:17136200-17138600	Weak transcription	NHLF	lung

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